MirGeneDB ID | Hvu-Mir-3011 |
Family name |
MIR-3011 (all species) |
Seed |
UGAUUUU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_481: 321826-321879 [-]
|
Precursor (pre-Mir +30nt flank) |
UCUACGAAACUUUUUGUCAUGAUUCUUUCGUAAAUCAUUUUUUGAAUCAGAGGGGAAGUCCUUGAUUUUAUGGAAUGAUUUACGAAAAAAUUGACAAAUCUGCAUCAUCAUUUA
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|
Structure | 10 20 30 40 50
UCUACGAAACUUUUUGUCAU-- C UU-| G GG
GAUU UUUCGUAAAUCAUUUU GAAUCA AGG A
UUAA AAAGCAUUUAGUAAGG UUUAGU UCC A
AUUUACUACUACGUCUAAACAG A UAU^ - UG
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hvu-Mir-3011_5p* |
mirBase accession | None |
Sequence |
0- UAAAUCAUUUUUUGAAUCAGAGG -23
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|
Mature sequence |
Hvu-Mir-3011_3p |
mirBase accession | None |
Sequence |
31- UUGAUUUUAUGGAAUGAUUUACG -54
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|