MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3011

Family name MIR-3011 (all species)
Seed UGAUUUU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_481: 321826-321879 [-]
Precursor
(pre-Mir +30nt flank)
UCUACGAAACUUUUUGUCAUGAUUCUUUCGUAAAUCAUUUUUUGAAUCAGAGGGGAAGUCCUUGAUUUUAUGGAAUGAUUUACGAAAAAAUUGACAAAUCUGCAUCAUCAUUUA
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Structure
        10        20          30        40         50      
UCUACGAAACUUUUUGUCAU--    C                UU-|     G   GG 
                      GAUU UUUCGUAAAUCAUUUU   GAAUCA AGG  A
                      UUAA AAAGCAUUUAGUAAGG   UUUAGU UCC  A
AUUUACUACUACGUCUAAACAG    A                UAU^     -   UG 
  110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Mir-3011_5p*

mirBase accessionNone
Sequence
0- UAAAUCAUUUUUUGAAUCAGAGG -23
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Mature sequence

Hvu-Mir-3011_3p

mirBase accessionNone
Sequence
31- UUGAUUUUAUGGAAUGAUUUACG -54
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