MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-4

Family name HVU-NOVEL-4 (all species)
Seed GAAAAUG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_262.2: 1237021-1237069 [-]
Precursor
(pre-Mir +30nt flank)
UUUGCUAUUUUUAAAUGAUAUAUAAUAUUCUGAAAAUGUUAUCCAAUGAGCCUGAGGCUUGCUGGAUAACAUUUUCAGAACAUUAUAUAUCAUUUGCACUUGUAAAAAA
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Structure
        10          20        30        40        50    
UUUGCUAUUUUUAAAUG--|        A                  AU    CU 
                   AUAUAUAAU UUCUGAAAAUGUUAUCCA  GAGC  \
                   UAUAUAUUA AAGACUUUUACAAUAGGU  UUCG  G
AAAAAAUGUUCACGUUUAC^        C                  CG    GA 
       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Novel-4_5p

mirBase accessionNone
Sequence
0- UGAAAAUGUUAUCCAAUGAGC -21
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Co-mature sequence

Hvu-Novel-4_3p

mirBase accessionNone
Sequence
28- UUGCUGGAUAACAUUUUCAGA -49
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