MirGeneDB ID | Hvu-Novel-4 |
Family name |
HVU-NOVEL-4 (all species) |
Seed |
GAAAAUG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_262.2: 1237021-1237069 [-]
|
Precursor (pre-Mir +30nt flank) |
UUUGCUAUUUUUAAAUGAUAUAUAAUAUUCUGAAAAUGUUAUCCAAUGAGCCUGAGGCUUGCUGGAUAACAUUUUCAGAACAUUAUAUAUCAUUUGCACUUGUAAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGCUAUUUUUAAAUG--| A AU CU
AUAUAUAAU UUCUGAAAAUGUUAUCCA GAGC \
UAUAUAUUA AAGACUUUUACAAUAGGU UUCG G
AAAAAAUGUUCACGUUUAC^ C CG GA
100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Novel-4_5p |
mirBase accession | None |
Sequence |
0- UGAAAAUGUUAUCCAAUGAGC -21
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|
Co-mature sequence |
Hvu-Novel-4_3p |
mirBase accession | None |
Sequence |
28- UUGCUGGAUAACAUUUUCAGA -49
Get sequence
|