MirGeneDB ID | Hvu-Mir-3010 |
Family name |
MIR-3010 (all species) |
Seed |
GAGAGCG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_1021: 42949-42998 [+]
|
Precursor (pre-Mir +30nt flank) |
AAUUACCAAAAUAAUUUUAAAAUCUAGGCAAAUUUAUUUAUGCGCUCUGAUUUAAAAAUGAGAGCGCAAAAAUAAAUUUGCAUAGAAUUAUUUGAAGAAUUACCAAAAAG
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|
Structure | 10 20 30 40 50
AAUUACCAAAAUAAUUUUAAAA--| G A G U
UCUA GCAAAUUUAUUU UGCGCUCU AUU A
AGAU CGUUUAAAUAAA ACGCGAGA UAA A
GAAAAACCAUUAAGAAGUUUAUUA^ A A G A
. 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Mir-3010_5p* |
mirBase accession | None |
Sequence |
0- AAUUUAUUUAUGCGCUCUGAUU -22
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|
Mature sequence |
Hvu-Mir-3010_3p |
mirBase accession | None |
Sequence |
28- UGAGAGCGCAAAAAUAAAUUUG -50
Get sequence
|