| MirGeneDB ID | Hvu-Novel-13 |
|---|
| Family name |
HVU-NOVEL-13 (all species) |
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| Seed |
CCAAAUG |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. vulgaris
|
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| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_385: 256480-256529 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AGAACUUUCCCAAUCUCUGCAUAGGCUUUGUAAUCAUCUGACAUUUGUAGCUGGUAAGCUCCAAAUGUCGAAUGAUUACAAAGCCUUUUGUCUUAAAAGUUCUUUAAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAACUUUCCCAAUCUCU- U-| C U UG
GCA AGGCUUUGUAAUCAU UGACAUUUG AGC G
UGU UCCGAAACAUUAGUA GCUGUAAAC UCG U
UUAAAUUUCUUGAAAAUUC UU^ A C AA
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Hvu-Novel-13_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UAAUCAUCUGACAUUUGUAGC -21
Get sequence
|
|---|
| Mature sequence |
Hvu-Novel-13_3p |
| mirBase accession | None |
|---|
| Sequence |
29- UCCAAAUGUCGAAUGAUUACA -50
Get sequence
|
|---|
