MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3007-v1

Family name MIR-3007 (all species)
Seed GUUCGGC
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues Hvu-Mir-3007-v2 
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_3789: 111110-111160 [+]
Precursor
(pre-Mir +30nt flank)
AGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUU
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Structure
        10           20        30        40        50     
AGUGACUUACUUAUUAA---|   G            C            UG  GUG 
                    CUUU UGUCAACAUGUU GGCGUUUUUACC  CA   \
                    GAAA ACAGUUGUACAA CCGCAAAAAUGG  GU   U
UUUUAGGCAUGUUUAUUGUC^   -            A            GU  CAA 
 .       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Mir-3007-v1_5p

mirBase accessionNone
Sequence
0- UGUUCGGCGUUUUUACCUGCA -21
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Star sequence

Hvu-Mir-3007-v1_3p*

mirBase accessionNone
Sequence
30- UGGGUAAAAACGCCAAACAUG -51
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