MirGeneDB ID | Hvu-Mir-3007-v1 |
Family name |
MIR-3007 (all species) |
Seed |
GUUCGGC |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
Hvu-Mir-3007-v2
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_3789: 111110-111160 [+]
|
Precursor (pre-Mir +30nt flank) |
AGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGACUUACUUAUUAA---| G C UG GUG
CUUU UGUCAACAUGUU GGCGUUUUUACC CA \
GAAA ACAGUUGUACAA CCGCAAAAAUGG GU U
UUUUAGGCAUGUUUAUUGUC^ - A GU CAA
. 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Hvu-Mir-3007-v1_5p |
mirBase accession | None |
Sequence |
0- UGUUCGGCGUUUUUACCUGCA -21
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|
Star sequence |
Hvu-Mir-3007-v1_3p* |
mirBase accession | None |
Sequence |
30- UGGGUAAAAACGCCAAACAUG -51
Get sequence
|