MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3007-v2

Family name MIR-3007 (all species)
Seed UGUUCGG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues Hvu-Mir-3007-v1 
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_3789: 111109-111161 [+]
Precursor
(pre-Mir +30nt flank)
UAGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUUA
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Structure
        10           20        30        40        50      
UAGUGACUUACUUAUUAA---|   G            C            UG  GUG 
                     CUUU UGUCAACAUGUU GGCGUUUUUACC  CA   \
                     GAAA ACAGUUGUACAA CCGCAAAAAUGG  GU   U
AUUUUAGGCAUGUUUAUUGUC^   -            A            GU  CAA 
 110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Mir-3007-v2_5p

mirBase accessionNone
Sequence
0- AUGUUCGGCGUUUUUACCUGCA -22
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Star sequence

Hvu-Mir-3007-v2_3p*

mirBase accessionNone
Sequence
31- UGGGUAAAAACGCCAAACAUGU -53
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