MirGeneDB ID | Hvu-Mir-3007-v2 |
Family name |
MIR-3007 (all species) |
Seed |
UGUUCGG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
Hvu-Mir-3007-v1
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_3789: 111109-111161 [+]
|
Precursor (pre-Mir +30nt flank) |
UAGUGACUUACUUAUUAACUUUGUGUCAACAUGUUCGGCGUUUUUACCUGCAGUGUAACUGUGGGUAAAAACGCCAAACAUGUUGACAAAAGCUGUUAUUUGUACGGAUUUUA
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|
Structure | 10 20 30 40 50
UAGUGACUUACUUAUUAA---| G C UG GUG
CUUU UGUCAACAUGUU GGCGUUUUUACC CA \
GAAA ACAGUUGUACAA CCGCAAAAAUGG GU U
AUUUUAGGCAUGUUUAUUGUC^ - A GU CAA
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Hvu-Mir-3007-v2_5p |
mirBase accession | None |
Sequence |
0- AUGUUCGGCGUUUUUACCUGCA -22
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|
Star sequence |
Hvu-Mir-3007-v2_3p* |
mirBase accession | None |
Sequence |
31- UGGGUAAAAACGCCAAACAUGU -53
Get sequence
|