MirGeneDB ID | Hvu-Novel-12 |
Family name |
HVU-NOVEL-12 (all species) |
Seed |
UUCAUUA |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_92: 465151-465200 [-]
|
Precursor (pre-Mir +30nt flank) |
UUGAAGUUGAACAAGACCUUAGAUUGUACAUUUAUGUGAAAUAAUGAAAUAGUGAUCUAUUUCAUUAUUUUACCUAAAUGUACAAUUUUUUAUGACAAUCAUAAACUUUG
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|
Structure | 10 20 30 40 50
UUGAAGUUGAACAAGACCUU--| U GU
AGAUUGUACAUUUA GUGAAAUAAUGAAAUA G
UUUAACAUGUAAAU CAUUUUAUUACUUUAU A
GUUUCAAAUACUAACAGUAUUU^ C CU
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Hvu-Novel-12_5p* |
mirBase accession | None |
Sequence |
0- UUUAUGUGAAAUAAUGAAAUA -21
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|
Mature sequence |
Hvu-Novel-12_3p |
mirBase accession | None |
Sequence |
29- UUUCAUUAUUUUACCUAAAUG -50
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|