MirGeneDB 2.1

MirGeneDB ID

Hvu-Novel-12

Family name HVU-NOVEL-12 (all species)
Seed UUCAUUA
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_92: 465151-465200 [-]
Precursor
(pre-Mir +30nt flank)
UUGAAGUUGAACAAGACCUUAGAUUGUACAUUUAUGUGAAAUAAUGAAAUAGUGAUCUAUUUCAUUAUUUUACCUAAAUGUACAAUUUUUUAUGACAAUCAUAAACUUUG
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Structure
        10        20          30        40        50    
UUGAAGUUGAACAAGACCUU--|             U                GU 
                      AGAUUGUACAUUUA GUGAAAUAAUGAAAUA  G
                      UUUAACAUGUAAAU CAUUUUAUUACUUUAU  A
GUUUCAAAUACUAACAGUAUUU^             C                CU 
.       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
1_ 2_ 3_ 3_ Un
Star sequence

Hvu-Novel-12_5p*

mirBase accessionNone
Sequence
0- UUUAUGUGAAAUAAUGAAAUA -21
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Mature sequence

Hvu-Novel-12_3p

mirBase accessionNone
Sequence
29- UUUCAUUAUUUUACCUAAAUG -50
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