MirGeneDB ID | Hvu-Novel-2 |
Family name |
HVU-NOVEL-2 (all species) |
Seed |
AAAUUUC |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_39: 1438574-1438630 [+]
|
Precursor (pre-Mir +30nt flank) |
AUGUCUGGUGUCAGAAAGACACAAAUUACCAGAAAUUAUUAUGAAAUUUAUCGUAACGUAAAUGAUAAAUUUCACAAUAUUUUCUGGUAAUAUUUUAUAUCAAGCACGAUUUGGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGUCUGGUGUCAGAAAGACACAA--| U A GUAAC
AUUACCAGAAA UAUU UGAAAUUUAUC \
UAAUGGUCUUU AUAA ACUUUAAAUAG G
AAAGGUUUAGCACGAACUAUAUUUUA^ U C UAAAU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- AGAAAUUAUUAUGAAAUUUAUC -22
Get sequence
|
Mature sequence |
Hvu-Novel-2_3p |
mirBase accession | None |
Sequence |
35- UAAAUUUCACAAUAUUUUCUGG -57
Get sequence
|