MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-2

Family name HVU-NOVEL-2 (all species)
Seed AAAUUUC
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_39: 1438574-1438630 [+]
Precursor
(pre-Mir +30nt flank)
AUGUCUGGUGUCAGAAAGACACAAAUUACCAGAAAUUAUUAUGAAAUUUAUCGUAACGUAAAUGAUAAAUUUCACAAUAUUUUCUGGUAAUAUUUUAUAUCAAGCACGAUUUGGAAA
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Structure
        10        20          30        40        50        
AUGUCUGGUGUCAGAAAGACACAA--|          U    A           GUAAC 
                          AUUACCAGAAA UAUU UGAAAUUUAUC     \
                          UAAUGGUCUUU AUAA ACUUUAAAUAG     G
AAAGGUUUAGCACGAACUAUAUUUUA^          U    C           UAAAU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Novel-2_5p*

mirBase accessionNone
Sequence
0- AGAAAUUAUUAUGAAAUUUAUC -22
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Mature sequence

Hvu-Novel-2_3p

mirBase accessionNone
Sequence
35- UAAAUUUCACAAUAUUUUCUGG -57
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