MirGeneDB ID | Hvu-Novel-8 |
Family name |
HVU-NOVEL-8 (all species) |
Seed |
GAGAACU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_341: 579915-579966 [+]
|
Precursor (pre-Mir +30nt flank) |
CAAAGUAAAAUCUAUAAAAUAUUCUAAAAGUAUAUCAAGUUAGUUCUCAAAGAAGCUUCUUUGAGAACUAACAUGAUAUACUUUGAGAGAGAGAUAUUUUUGGUAAUAAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAAGUAAAAUCUAUAAAAUA--| A A AA
UUCU AAAGUAUAUCA GUUAGUUCUCAAAG G
GAGA UUUCAUAUAGU CAAUCAAGAGUUUC C
GUAAAUAAUGGUUUUUAUAGAGA^ G A UU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Novel-8_5p* |
mirBase accession | None |
Sequence |
0- UAUAUCAAGUUAGUUCUCAAAG -22
Get sequence
|
Mature sequence |
Hvu-Novel-8_3p |
mirBase accession | None |
Sequence |
31- UGAGAACUAACAUGAUAUACU -52
Get sequence
|