MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-8

Family name HVU-NOVEL-8 (all species)
Seed GAGAACU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_341: 579915-579966 [+]
Precursor
(pre-Mir +30nt flank)
CAAAGUAAAAUCUAUAAAAUAUUCUAAAAGUAUAUCAAGUUAGUUCUCAAAGAAGCUUCUUUGAGAACUAACAUGAUAUACUUUGAGAGAGAGAUAUUUUUGGUAAUAAAUG
Get precursor sequence
Structure
        10        20          30        40        50     
CAAAGUAAAAUCUAUAAAAUA--|   A           A              AA 
                       UUCU AAAGUAUAUCA GUUAGUUCUCAAAG  G
                       GAGA UUUCAUAUAGU CAAUCAAGAGUUUC  C
GUAAAUAAUGGUUUUUAUAGAGA^   G           A              UU 
110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Novel-8_5p*

mirBase accessionNone
Sequence
0- UAUAUCAAGUUAGUUCUCAAAG -22
Get sequence
Mature sequence

Hvu-Novel-8_3p

mirBase accessionNone
Sequence
31- UGAGAACUAACAUGAUAUACU -52
Get sequence