MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3003-P1

Family name MIR-3003 (all species)
Seed AAAUGUG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues Hvu-Mir-3003-P2 
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_796: 523053-523102 [-]
Precursor
(pre-Mir +30nt flank)
AACAUAGACUUGUAAAAGCUAUUUAUAUCAUUACCAAAUUGCACACUUAACAUAACUGUUAAAUGUGCAAACUGGUAAUGAAAUAAAUACUGUUUUAUCGUUUUUGUUUG
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Structure
        10          20        30        40        50    
AACAUAGACUUGUAAAAGC--|      A         AA       C     AU 
                     UAUUUAU UCAUUACCA  UUGCACA UUAAC  A
                     AUAAAUA AGUAAUGGU  AACGUGU AAUUG  A
GUUUGUUUUUGCUAUUUUGUC^      A         CA       A     UC 
.       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Mir-3003-P1_5p*

mirBase accessionNone
Sequence
0- UUACCAAAUUGCACACUUAAC -21
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Mature sequence

Hvu-Mir-3003-P1_3p

mirBase accessionNone
Sequence
29- UAAAUGUGCAAACUGGUAAUG -50
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