MirGeneDB ID | Hvu-Mir-3003-P1 |
Family name |
MIR-3003 (all species) |
Seed |
AAAUGUG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
Hvu-Mir-3003-P2
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_796: 523053-523102 [-]
|
Precursor (pre-Mir +30nt flank) |
AACAUAGACUUGUAAAAGCUAUUUAUAUCAUUACCAAAUUGCACACUUAACAUAACUGUUAAAUGUGCAAACUGGUAAUGAAAUAAAUACUGUUUUAUCGUUUUUGUUUG
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|
Structure | 10 20 30 40 50
AACAUAGACUUGUAAAAGC--| A AA C AU
UAUUUAU UCAUUACCA UUGCACA UUAAC A
AUAAAUA AGUAAUGGU AACGUGU AAUUG A
GUUUGUUUUUGCUAUUUUGUC^ A CA A UC
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Mir-3003-P1_5p* |
mirBase accession | None |
Sequence |
0- UUACCAAAUUGCACACUUAAC -21
Get sequence
|
Mature sequence |
Hvu-Mir-3003-P1_3p |
mirBase accession | None |
Sequence |
29- UAAAUGUGCAAACUGGUAAUG -50
Get sequence
|