MirGeneDB ID | Hvu-Mir-3003-P2 |
Family name |
MIR-3003 (all species) |
Seed |
UAAAUGU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
Hvu-Mir-3003-P1
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_90: 71712-71761 [+]
|
Precursor (pre-Mir +30nt flank) |
UUGACAUAAAAGCAAAUGCUAUUUAUAUCAUUACCAGUGUGCACAUUUAACAUUAUUGUUAAAUGUGCCAACUGGUAAUGAAAUAAAUACUGUUUUAUCUCUGCUUAUGU
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|
Structure | 10 20 30 40 50
UUGACAUAAAAGCAAAUGC--| A GU U
UAUUUAU UCAUUACCAGU GCACAUUUAACA U
AUAAAUA AGUAAUGGUCA CGUGUAAAUUGU A
UGUAUUCGUCUCUAUUUUGUC^ A AC U
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Hvu-Mir-3003-P2_5p* |
mirBase accession | None |
Sequence |
0- UUACCAGUGUGCACAUUUAACA -22
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|
Mature sequence |
Hvu-Mir-3003-P2_3p |
mirBase accession | None |
Sequence |
28- UUAAAUGUGCCAACUGGUAAUG -50
Get sequence
|