MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3003-P2

Family name MIR-3003 (all species)
Seed UAAAUGU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues Hvu-Mir-3003-P1 
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_90: 71712-71761 [+]
Precursor
(pre-Mir +30nt flank)
UUGACAUAAAAGCAAAUGCUAUUUAUAUCAUUACCAGUGUGCACAUUUAACAUUAUUGUUAAAUGUGCCAACUGGUAAUGAAAUAAAUACUGUUUUAUCUCUGCUUAUGU
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Structure
        10          20        30        40        50    
UUGACAUAAAAGCAAAUGC--|      A           GU            U 
                     UAUUUAU UCAUUACCAGU  GCACAUUUAACA U
                     AUAAAUA AGUAAUGGUCA  CGUGUAAAUUGU A
UGUAUUCGUCUCUAUUUUGUC^      A           AC            U 
.       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Mir-3003-P2_5p*

mirBase accessionNone
Sequence
0- UUACCAGUGUGCACAUUUAACA -22
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Mature sequence

Hvu-Mir-3003-P2_3p

mirBase accessionNone
Sequence
28- UUAAAUGUGCCAACUGGUAAUG -50
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