MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-5

Family name HVU-NOVEL-5 (all species)
Seed GAAAGUC
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_628: 712925-712976 [-]
Precursor
(pre-Mir +30nt flank)
UUUUGGUUAAAUUGGUCAUAUCGUUGUUCCUGAAAGUCUGAUUGGUCUUAUCGUUGCUCGAUAAGACCAUGAGACUUUCAGGAGCACCUAAUAAUAAUAAAAAAAAAAUCCC
Get precursor sequence
Structure
        10        20          30        40        50      
UUUUGGUUAAAUUGGUCAUAUCGU--|              G  U         GUU 
                          UGUUCCUGAAAGUCU AU GGUCUUAUC   \
                          ACGAGGACUUUCAGA UA CCAGAAUAG   G
CCCUAAAAAAAAAAUAAUAAUAAUCC^              G  -         CUC 
110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Novel-5_5p

mirBase accessionNone
Sequence
0- UGAAAGUCUGAUUGGUCUUAUC -22
Get sequence
Star sequence

Hvu-Novel-5_3p*

mirBase accessionNone
Sequence
31- UAAGACCAUGAGACUUUCAGG -52
Get sequence