MirGeneDB ID | Hvu-Novel-5 |
Family name |
HVU-NOVEL-5 (all species) |
Seed |
GAAAGUC |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_628: 712925-712976 [-]
|
Precursor (pre-Mir +30nt flank) |
UUUUGGUUAAAUUGGUCAUAUCGUUGUUCCUGAAAGUCUGAUUGGUCUUAUCGUUGCUCGAUAAGACCAUGAGACUUUCAGGAGCACCUAAUAAUAAUAAAAAAAAAAUCCC
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|
Structure | 10 20 30 40 50
UUUUGGUUAAAUUGGUCAUAUCGU--| G U GUU
UGUUCCUGAAAGUCU AU GGUCUUAUC \
ACGAGGACUUUCAGA UA CCAGAAUAG G
CCCUAAAAAAAAAAUAAUAAUAAUCC^ G - CUC
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Novel-5_5p |
mirBase accession | None |
Sequence |
0- UGAAAGUCUGAUUGGUCUUAUC -22
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|
Star sequence |
Hvu-Novel-5_3p* |
mirBase accession | None |
Sequence |
31- UAAGACCAUGAGACUUUCAGG -52
Get sequence
|