MirGeneDB ID | Hvu-Novel-11 |
Family name |
HVU-NOVEL-11 (all species) |
Seed |
AGCUCUU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_166.1: 232089-232140 [+]
|
Precursor (pre-Mir +30nt flank) |
AGUUGCAUUUAAAUUACGAUGCAGGUAAUUAAGCUCUUGAAUAAUGUAAUUAUAACUAUAAUUACAUAAUUUGAGAUUUUAAUUAGCUGUGUUGUGAUGAAAACGUUCAAGA
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|
Structure | 10 20 30 40 50
AGUUGCAUUUAAAUUAC--| G C UG A AUA
GAUGCAG UAAUUAAG UCU AAU AUGUAAUU A
UUGUGUC AUUAAUUU AGA UUA UACAUUAA C
AGAACUUGCAAAAGUAGUG^ G U GU A UAU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Novel-11_5p |
mirBase accession | None |
Sequence |
0- AAGCUCUUGAAUAAUGUAAUU -21
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|
Star sequence |
Hvu-Novel-11_3p* |
mirBase accession | None |
Sequence |
31- UUACAUAAUUUGAGAUUUUAA -52
Get sequence
|