MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-11

Family name HVU-NOVEL-11 (all species)
Seed AGCUCUU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_166.1: 232089-232140 [+]
Precursor
(pre-Mir +30nt flank)
AGUUGCAUUUAAAUUACGAUGCAGGUAAUUAAGCUCUUGAAUAAUGUAAUUAUAACUAUAAUUACAUAAUUUGAGAUUUUAAUUAGCUGUGUUGUGAUGAAAACGUUCAAGA
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Structure
        10          20        30        40        50     
AGUUGCAUUUAAAUUAC--|      G        C   UG   A        AUA 
                   GAUGCAG UAAUUAAG UCU  AAU AUGUAAUU   A
                   UUGUGUC AUUAAUUU AGA  UUA UACAUUAA   C
AGAACUUGCAAAAGUAGUG^      G        U   GU   A        UAU 
110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Novel-11_5p

mirBase accessionNone
Sequence
0- AAGCUCUUGAAUAAUGUAAUU -21
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Star sequence

Hvu-Novel-11_3p*

mirBase accessionNone
Sequence
31- UUACAUAAUUUGAGAUUUUAA -52
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