MirGeneDB ID | Hvu-Novel-9 |
Family name |
HVU-NOVEL-9 (all species) |
Seed |
AACUUUG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_1096: 115465-115515 [-]
|
Precursor (pre-Mir +30nt flank) |
UUUGAAGAAUAAUUUUAACAGAAGUGCUAGUAACUUUGAUGAAUUCUUAAUAUGACGUAUUAAGAAUUCAUUUAAGUCACUAGCACUGAAUUCAUCAAAGUCACUACACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGAAGAAUAAUUUUAACAGA--| A U AUG
AGUGCUAGU ACUU GAUGAAUUCUUAAU \
UCACGAUCA UGAA UUACUUAAGAAUUA A
UACACAUCACUGAAACUACUUAAG^ C U UGC
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Novel-9_5p |
mirBase accession | None |
Sequence |
0- UAACUUUGAUGAAUUCUUAAU -21
Get sequence
|
Star sequence |
Hvu-Novel-9_3p* |
mirBase accession | None |
Sequence |
30- UAAGAAUUCAUUUAAGUCACU -51
Get sequence
|