MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-9

Family name HVU-NOVEL-9 (all species)
Seed AACUUUG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_1096: 115465-115515 [-]
Precursor
(pre-Mir +30nt flank)
UUUGAAGAAUAAUUUUAACAGAAGUGCUAGUAACUUUGAUGAAUUCUUAAUAUGACGUAUUAAGAAUUCAUUUAAGUCACUAGCACUGAAUUCAUCAAAGUCACUACACAU
Get precursor sequence
Structure
        10        20          30        40        50     
UUUGAAGAAUAAUUUUAACAGA--|        A    U              AUG 
                        AGUGCUAGU ACUU GAUGAAUUCUUAAU   \
                        UCACGAUCA UGAA UUACUUAAGAAUUA   A
UACACAUCACUGAAACUACUUAAG^        C    U              UGC 
 .       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Novel-9_5p

mirBase accessionNone
Sequence
0- UAACUUUGAUGAAUUCUUAAU -21
Get sequence
Star sequence

Hvu-Novel-9_3p*

mirBase accessionNone
Sequence
30- UAAGAAUUCAUUUAAGUCACU -51
Get sequence