MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-1

Family name HVU-NOVEL-1 (all species)
Seed AGAAAAU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_1951: 2522-2571 [-]
Precursor
(pre-Mir +30nt flank)
AAGGUGUUAUUCUAUUUUUAGAUAAAGUUGUAGAAAAUUGUUAAUUUUGCAUUUCGUUGCAAAAUUUACAAUGUUCUACAACUUAUGUUAGCUGUAUUCAUCAACAAAGA
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Structure
        10        20          30        40        50    
AAGGUGUUAUUCUAUUUUUA-    -|          A     U         UU 
                     GAUA AAGUUGUAGAA AUUGU AAUUUUGCA  U
                     UUGU UUCAACAUCUU UAACA UUAAAACGU  C
AGAAACAACUACUUAUGUCGA    A^          G     U         UG 
.       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Novel-1_5p

mirBase accessionNone
Sequence
0- UAGAAAAUUGUUAAUUUUGCA -21
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Star sequence

Hvu-Novel-1_3p*

mirBase accessionNone
Sequence
29- CAAAAUUUACAAUGUUCUACA -50
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