MirGeneDB ID | Hvu-Novel-1 |
Family name |
HVU-NOVEL-1 (all species) |
Seed |
AGAAAAU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_1951: 2522-2571 [-]
|
Precursor (pre-Mir +30nt flank) |
AAGGUGUUAUUCUAUUUUUAGAUAAAGUUGUAGAAAAUUGUUAAUUUUGCAUUUCGUUGCAAAAUUUACAAUGUUCUACAACUUAUGUUAGCUGUAUUCAUCAACAAAGA
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|
Structure | 10 20 30 40 50
AAGGUGUUAUUCUAUUUUUA- -| A U UU
GAUA AAGUUGUAGAA AUUGU AAUUUUGCA U
UUGU UUCAACAUCUU UAACA UUAAAACGU C
AGAAACAACUACUUAUGUCGA A^ G U UG
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Novel-1_5p |
mirBase accession | None |
Sequence |
0- UAGAAAAUUGUUAAUUUUGCA -21
Get sequence
|
Star sequence |
Hvu-Novel-1_3p* |
mirBase accession | None |
Sequence |
29- CAAAAUUUACAAUGUUCUACA -50
Get sequence
|