MirGeneDB ID | Hvu-Novel-15 |
Family name |
HVU-NOVEL-15 (all species) |
Seed |
GACAUAG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_226.1: 1498610-1498660 [+]
|
Precursor (pre-Mir +30nt flank) |
CAUUACAGCAACUUAAAAAGUAGUUGGUAAUGUCAGUUACCAAUUAUGUCAGUUAGUAACUGACAUAGUUAGUACUACAUUAACAACUAUUUUUCACUGAUUUGUGAACCG
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUUACAGCAACUUAAA--| G C U C UA
AAGUAGUUG UAAUGU AGU AC AAUUAUGUCAGU \
UUUAUCAAC AUUACA UCA UG UUGAUACAGUCA G
GCCAAGUGUUUAGUCACUU^ A - - A AU
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Novel-15_5p* |
mirBase accession | None |
Sequence |
0- UGUCAGUUACCAAUUAUGUCAGU -23
Get sequence
|
Mature sequence |
Hvu-Novel-15_3p |
mirBase accession | None |
Sequence |
30- UGACAUAGUUAGUACUACAUU -51
Get sequence
|