| MirGeneDB ID | Laf-Mir-140-P1-v1 |
|---|---|
| Family name | MIR-140 (all species) |
| Seed | CCACAGG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-140-P1-v2 |
| Orthologues | Pma-Mir-140-o1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010075.1: 11188766-11188827 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCUGUGUGUGUCUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACCGGGGCACCCUCUGCAUCGAAGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UCUGUGUGUGUCUCUCU-- U -| A A GUUACGU CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAG C GGG CAUAGGAC GG CACCAAGAUGGGA ACCAUC A GGAAGCUACGUCUCCCACG C A^ - C UUGUCGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-140-P1-v1_5p* |
| mirBase accession | None |
| Sequence |
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
|
| Mature sequence | Laf-Mir-140-P1-v1_3p |
| mirBase accession | None |
| Sequence |
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
|
