| MirGeneDB ID | Laf-Mir-140-P1-v1 |
|---|
| Family name |
MIR-140 (all species) |
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| Seed |
CCACAGG |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
Laf-Mir-140-P1-v2
|
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| Orthologues |
Pma-Mir-140-o1
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010075.1: 11188766-11188827 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUGUGUGUGUCUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACCGGGGCACCCUCUGCAUCGAAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUGUGUGUGUCUCUCU-- U -| A A GUUACGU
CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAG C
GGG CAUAGGAC GG CACCAAGAUGGGA ACCAUC A
GGAAGCUACGUCUCCCACG C A^ - C UUGUCGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Laf-Mir-140-P1-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
|
|---|
| Mature sequence |
Laf-Mir-140-P1-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
|
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