| MirGeneDB ID | Pma-Mir-140-o1 |
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| Family name |
MIR-140 (all species) |
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| Seed |
AGUGGUU |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-140
|
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| Paralogues |
Pma-Mir-140-o2
Pma-Mir-140-o3
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| Orthologues |
Laf-Mir-140-P1-v1
Laf-Mir-140-P1-v2
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046131.1: 1629117-1629178 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACAACGACAACCCCCCCGUCUCGACCGCUCAGUGGUUUUACCCUAUGGUAGCUUUGAAUGGCAGACUCUACCACAGGGUAGAACCACGGACCGGUGACGGGGGGGGUGGUGGGACGCUGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UACAACGACAACCCCCC-----| UCG C A A CUUUGAA
CGUC ACCG UC GUGGUUUUACCCU UGGUAG U
GCAG UGGC AG CACCAAGAUGGGA ACCAUC G
GCGUCGCAGGGUGGUGGGGGGG^ --- C G C UCAGACG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There are three snps between the assembled genome and the miRBase entry. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-140-o1_5p |
| mirBase accession | MIMAT0019471 |
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| Sequence |
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
|
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| Star sequence |
Pma-Mir-140-o1_3p* |
| mirBase accession | None |
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| Sequence |
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
|
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