| MirGeneDB ID | Laf-Mir-2483 |
|---|
| Family name |
MIR-2483 (all species) |
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| Seed |
GUCAACC |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-2483
Cfa-Mir-2483
Dno-Mir-2483
Eca-Mir-2483
Ete-Mir-2483
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010059.1: 5347799-5347854 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGACACCCAAAUAUGUGAGUGAAAAGUUCCGUCAACCAUCCAGCUGUUUGGGGUGAUACAAACAAACAUCUGGUUGGUUGAGAGAAUUUUUUACUUAGUCUCUGGAUGUUUCGGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGACACCCAAAUAUGU--| CG U C GGGUG
GAGUGAAAAGUUC UCAACCA CCAG UGUUUG A
UUCAUUUUUUAAG AGUUGGU GGUC ACAAAC U
AGGCUUUGUAGGUCUCUGA^ AG U U AAACA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -2 on the 5p arm. |
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Laf-Mir-2483_5p |
| mirBase accession | None |
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| Sequence |
0- CGUCAACCAUCCAGCUGUUUGG -22
Get sequence
|
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| Star sequence |
Laf-Mir-2483_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
34- AAACAUCUGGUUGGUUGAGAGA -56
Get sequence
|
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