| MirGeneDB ID | Laf-Mir-2483 |
|---|---|
| Family name | MIR-2483 (all species) |
| Seed | GUCAACC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-2483 Cfa-Mir-2483 Dno-Mir-2483 Eca-Mir-2483 Ete-Mir-2483 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010059.1: 5347799-5347854 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGACACCCAAAUAUGUGAGUGAAAAGUUCCGUCAACCAUCCAGCUGUUUGGGGUGAUACAAACAAACAUCUGGUUGGUUGAGAGAAUUUUUUACUUAGUCUCUGGAUGUUUCGGAGet precursor sequence |
| Structure | 10 20 30 40 50 GUGACACCCAAAUAUGU--| CG U C GGGUG GAGUGAAAAGUUC UCAACCA CCAG UGUUUG A UUCAUUUUUUAAG AGUUGGU GGUC ACAAAC U AGGCUUUGUAGGUCUCUGA^ AG U U AAACA 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | There is a second Drosha cut -2 on the 5p arm. |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Mature sequence | Laf-Mir-2483_5p |
| mirBase accession | None |
| Sequence |
0- CGUCAACCAUCCAGCUGUUUGG -22
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|
| Star sequence | Laf-Mir-2483_3p* (predicted) |
| mirBase accession | None |
| Sequence |
34- AAACAUCUGGUUGGUUGAGAGA -56
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|
