| MirGeneDB ID | Llo-Novel-2-v1 |
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| Family name |
LLO-NOVEL-2 (all species) |
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| Seed |
GGACUAU |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Novel-2-v2
|
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| Orthologues |
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Lineidae
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU342993.1: 9863718-9863780 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAUGACGUCUAACGAGUAUCUUUGUCACUCCCACUGCAGAAUGUAUGUCCCACAUGGCGAAUUAUAAAGUGUGGACUAUGUUCUACAAUGAGGGCGAUAGGGGCUGAAACAACAAAACCGCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAUGACGUCUAACGAGUA--| A C C C U - AUGGCGA
UCUUUGUC CUC CA UG AGAAUGUA GUCC CAC \
GGGGAUAG GGG GU AC UCUUGUAU CAGG GUG A
ACCGCCAAAACAACAAAGUC^ C A A A - U AAAUAUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Llo-Novel-2-v1_5p* |
| mirBase accession | None |
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| Sequence |
0- CCACUGCAGAAUGUAUGUCCCACA -24
Get sequence
|
|---|
| Mature sequence |
Llo-Novel-2-v1_3p |
| mirBase accession | None |
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| Sequence |
41- UGGACUAUGUUCUACAAUGAGG -63
Get sequence
|
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