| MirGeneDB ID | Llo-Novel-2-v2 |
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| Family name |
LLO-NOVEL-2 (all species) |
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| Seed |
ACUGCAG |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Novel-2-v1
|
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| Orthologues |
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Lineidae
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU342993.1: 9863719-9863779 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGACGUCUAACGAGUAUCUUUGUCACUCCCACUGCAGAAUGUAUGUCCCACAUGGCGAAUUAUAAAGUGUGGACUAUGUUCUACAAUGAGGGCGAUAGGGGCUGAAACAACAAAACCGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGACGUCUAACGAGUA--| A C C C U - AUGGCGA
UCUUUGUC CUC CA UG AGAAUGUA GUCC CAC \
GGGGAUAG GGG GU AC UCUUGUAU CAGG GUG A
CCGCCAAAACAACAAAGUC^ C A A A - U AAAUAUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Llo-Novel-2-v2_5p |
| mirBase accession | None |
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| Sequence |
0- CACUGCAGAAUGUAUGUCCCACAU -24
Get sequence
|
|---|
| Star sequence |
Llo-Novel-2-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- GUGGACUAUGUUCUACAAUGAG -61
Get sequence
|
|---|
