| MirGeneDB ID | Loc-Mir-430-o31 |
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| Family name |
MIR-430 (all species) |
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| Seed |
AAGUGCU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-430-o32
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| Orthologues |
Hsa-Mir-430-P31a
Hsa-Mir-430-P31b
Mml-Mir-430-P31
Pab-Mir-430-P31a
Pab-Mir-430-P31b
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| Node of Origin (locus) |
L. oculatus
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG7: 14528433-14528491 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAAGACUAUGCAAAAUGACACGUUCAGGCCCCUUCAAAGUGAAGCACUUGCUUGGAAUACCUGCAUGUAAGUGCUUAGUUUUGGAGUAGCUUUUAUGGGGUACAACAGAUCCAACGCGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAAGACUAUGCAAAAUG- A-| UC CC UG UUGGAAU
AC CGU AGGC CUUCAAAG AAGCACUUGC \
UG GUA UUCG GAGGUUUU UUCGUGAAUG A
AGCGCAACCUAGACAACA GG^ UU AU GA UACGUCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut -1 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-430-o31_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCUUCAAAGUGAAGCACUUGCU -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-430-o31_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UAAGUGCUUAGUUUUGGAGUAG -59
Get sequence
|
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