| MirGeneDB ID | Loc-Mir-430-o32 |
|---|
| Family name |
MIR-430 (all species) |
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| Seed |
AAGUGCU |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
|
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| Paralogues |
Loc-Mir-430-o31
|
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| Orthologues |
Hsa-Mir-430-P32
Mml-Mir-430-P32a1
Mml-Mir-430-P32a2
Mml-Mir-430-P32b
Pab-Mir-430-P32
|
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| Node of Origin (locus) |
L. oculatus
|
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG7: 14528223-14528281 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUAAAAGAUGGGAAGCCCCACUUGAAUCGAACCUCGACUUUAGCACUGUUCUUGGUAUGAUAUUAGAAAGUGCUACCAAGUGGAGGUGUGAUCUGGUGUUGUAAUUGGCUUGGCUAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAAAAGAUGGGAAGCCC--- U A A G --| G UGGUA
CACU G AUCG ACCUC ACUU UAGCACU UUCU U
GUGG C UAGU UGGAG UGAA AUCGUGA AAGA G
GGUAUCGGUUCGGUUAAUGUU U - G G CC^ - UUAUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Star sequence |
Loc-Mir-430-o32_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCUCGACUUUAGCACUGUUCU -22
Get sequence
|
|---|
| Mature sequence |
Loc-Mir-430-o32_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AAAGUGCUACCAAGUGGAGGUGU -59
Get sequence
|
|---|
