MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-724-v1

Family name MIR-724 (all species)
Seed UAAAGGG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-724-v2 
Orthologues
Node of Origin (locus) Neopterygii
Node of Origin (family) Neopterygii
Genome context
(LepOcu1)
LG3: 32539804-32539864 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGGCCGUGACAUCCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUGGUAAAACCAUUAGGACAGCCACACCUUCCUUUUAAGAUCUUGUCUGCUGCUCUAUCGUGCCCUGUUCU
Get precursor sequence
Structure
        10          20        30         40        50         
GCAGGGCCGUGACAUCC--        U     -|        UU  CGA     GGUAAA 
                   CAGCAGAC GGAUU UAAAGGGAA  UG   CUGUU      A
                   GUCGUCUG UCUAG AUUUUCCUU  AC   GACAG      C
UCUUGUCCCGUGCUAUCUC        U     A^        CC  ACC     GAUUAC 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-724-v1_5p

mirBase accessionNone
Sequence
0- UUAAAGGGAAUUUGCGACUGUU -22
Get sequence
Star sequence

Loc-Mir-724-v1_3p*

mirBase accessionNone
Sequence
38- CAGCCACACCUUCCUUUUAAGAU -61
Get sequence