MirGeneDB ID | Loc-Mir-724-v2 |
Family name |
MIR-724 (all species) |
Seed |
AAAGGGA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-724-v1
|
Orthologues |
|
Node of Origin (locus) |
Neopterygii
|
Node of Origin (family) |
Neopterygii
|
Genome context (LepOcu1) |
LG3: 32539805-32539863 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGGGCCGUGACAUCCCAGCAGACUGGAUUUAAAGGGAAUUUGCGACUGUUGGUAAAACCAUUAGGACAGCCACACCUUCCUUUUAAGAUCUUGUCUGCUGCUCUAUCGUGCCCUGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGGCCGUGACAUCCC-- U -| UU CGA GGUAAA
AGCAGAC GGAUU UAAAGGGAA UG CUGUU A
UCGUCUG UCUAG AUUUUCCUU AC GACAG C
CUUGUCCCGUGCUAUCUCG U A^ CC ACC GAUUAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Loc-Mir-724-v2_5p |
mirBase accession | None |
Sequence |
0- UAAAGGGAAUUUGCGACUGUUG -22
Get sequence
|
Star sequence |
Loc-Mir-724-v2_3p* |
mirBase accession | None |
Sequence |
36- ACAGCCACACCUUCCUUUUAAGA -59
Get sequence
|