MirGeneDB 2.1

MirGeneDB ID

Lpo-Novel-1

Family name LPO-NOVEL-1 (all species)
Seed CCUCUAC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) L. polyphemus
Node of Origin (family) L. polyphemus
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013665688.1: 595096-595157 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCAGAGCCGUUCUGGCCAGUUGUACUUAUUCCUCUACCUUGUGCGGCAGACAGUUGUUUACUUUAUUGUCUGUCCACAGGUCUAGGGGGCAGGGACUGGCUCAACCAGUUGUAAGAAACAG
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Structure
        10              20        30         40        50        60
GUCAGAGCCGUUCUGGC------|    GUA   AU       C-      C        GUUGUU 
                       CAGUU   CUU  UCCUCUA  CUUGUG GGCAGACA      U
                       GUCAG   GGA  GGGGGAU  GGACAC CUGUCUGU      A
GACAAAGAAUGUUGACCAACUCG^    ---   C-       CU      -        UAUUUC 
120       110       100            90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Novel-1_5p

mirBase accessionNone
Sequence
0- UCCUCUACCUUGUGCGGCAGACA -23
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Star sequence

Lpo-Novel-1_3p*

mirBase accessionNone
Sequence
39- UCUGUCCACAGGUCUAGGGGGCA -62
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