| MirGeneDB ID | Lpo-Novel-4 |
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| Family name |
LPO-NOVEL-4 (all species) |
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| Seed |
UUGACAC |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
L. polyphemus
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013668558.1: 71878-71936 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAAGCAAGUCUUCGUGUUUUCGGAGCGGGUCAAGCAACUAUAGUGUCACUGGUGUAGUUUUCUCCGUUGACACUGUGGUUGCAUGACUUGCUCAGGAAACUAAUUCUAAGAACCCAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCAAGCAAGUCUUCGUG--| G A C UGUAG
UUUUC GAGCGGGUCA GCAACUAUAGUGUCA UGG \
AAAGG CUCGUUCAGU CGUUGGUGUCACAGU GCC U
GUACCCAAGAAUCUUAAUC^ A A U UCUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
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|
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| Star sequence |
Lpo-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- UCAAGCAACUAUAGUGUCACUGG -23
Get sequence
|
|---|
| Mature sequence |
Lpo-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
36- GUUGACACUGUGGUUGCAUGACU -59
Get sequence
|
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