MirGeneDB ID | Mdo-Mir-12466 |
Family name |
MIR-12466 (all species) |
Seed |
AUCACAG |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Neu-Mir-12466
Sha-Mir-12466
|
Node of Origin (locus) |
Marsupialia
|
Node of Origin (family) |
Marsupialia
|
Genome context (monDom5_add) |
6: 166795585-166795641 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCAGAGAAAAUGCUGAACUGCAUUGGUAGAGGUUUCCUCAUCCGGGAAUUUCUUAUACUAAUGAAAUCACAGUUGAGGAAACUCGUACCAGUGCAGAUGGUUCUGCAGUCCCUAGU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCAGAGAAAAUGCUGAA--| GA UCCGG A UUAU
CUGCAUUGGUA GGUUUCCUCA GA UUUC A
GACGUGACCAU UCAAAGGAGU CU AAAG C
UGAUCCCUGACGUCUUGGUA^ GC UGACA - UAAU
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mdo-Mir-12466_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGUUUCCUCAUCCGGGAAUUUC -23
Get sequence
|
Mature sequence |
Mdo-Mir-12466_3p |
mirBase accession | None |
Sequence |
35- AAUCACAGUUGAGGAAACUCGU -57
Get sequence
|