MirGeneDB 3.0

149 microRNA genes with node of origin S. harrisii
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Sha-Mir-430-o10 None MIR-430 CCCUAAC None None GL850554.1 8373 8431 + S. harrisii Vertebrata No
Sha-Mir-430-o11 None MIR-430 AAGUGCU None None GL850554.1 9301 9361 + S. harrisii Vertebrata No
Sha-Mir-430-o12 None MIR-430 AAGUGCU None None GL850554.1 9594 9645 + S. harrisii Vertebrata No 1
Sha-Mir-430-o13 None MIR-430 AAGUGUU None None GL850554.1 10072 10130 + S. harrisii Vertebrata No
Sha-Mir-430-o14 None MIR-430 AAGUGCU None None GL850554.1 10797 10856 + S. harrisii Vertebrata No
Sha-Mir-430-o15 None MIR-430 AAGUGCU None None GL850554.1 11170 11227 + S. harrisii Vertebrata No 1
Sha-Mir-430-o16 None MIR-430 UCCUAAC None None GL850554.1 11719 11778 + S. harrisii Vertebrata No
Sha-Mir-430-o17 None MIR-430 AAGUGCU None None GL850554.1 13105 13161 + S. harrisii Vertebrata No
Sha-Mir-430-o18 None MIR-430 AAGUGCC None None GL850554.1 14118 14177 + S. harrisii Vertebrata No
Sha-Mir-430-o19 None MIR-430 AAGUGCU None None GL850554.1 14478 14536 + S. harrisii Vertebrata No
Sha-Mir-430-o20 None MIR-430 AGGUGCU None None GL850554.1 15192 15251 + S. harrisii Vertebrata No
Sha-Mir-430-o21 None MIR-430 AAGUACU None None GL850554.1 15527 15586 + S. harrisii Vertebrata No
Sha-Mir-430-o22 None MIR-430 AAGUGCU None None GL852829.1 5148 5207 + S. harrisii Vertebrata No
Sha-Mir-430-o23 None MIR-430 ACGUGCU None None GL852829.1 5467 5526 + S. harrisii Vertebrata No
Sha-Mir-430-o24 None MIR-430 AAGUGCU None None GL850554.1 7215 7274 + S. harrisii Vertebrata No
Sha-Mir-430-o25 None MIR-430 UCCUAAC None None GL850554.1 7366 7425 + S. harrisii Vertebrata No
Sha-Mir-430-o26 None MIR-430 AAGUGCU None None GL835236.1 89594 89652 + S. harrisii Vertebrata No
Sha-Mir-430-o27 None MIR-430 UUCUAAC None None GL835236.1 89874 89933 + S. harrisii Vertebrata No
Sha-Mir-430-o29 None MIR-430 UUCUAAC None None GL850554.1 7912 7971 + S. harrisii Vertebrata No
Sha-Mir-7371-o1 None MIR-7371 CCUUUGU None None GL867598.1 1401798 1401859 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o2 None MIR-7371 AGAGCAU None None GL867598.1 1403552 1403609 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o3 None MIR-7371 AGAGCAU None None GL867598.1 1405296 1405356 - S. harrisii Marsupialia No 1
Sha-Mir-7371-o4-v1 None MIR-7371 AGAGCAU None None GL867598.1 1407246 1407303 - S. harrisii Marsupialia Yes 1 1
Sha-Mir-7371-o4-v2 None MIR-7371 GAGCAUC None None GL867598.1 1407246 1407304 - S. harrisii Marsupialia Yes 1 1
Sha-Mir-7371-o13 None MIR-7371 CUUGGAU None None GL867599.1 281866 281924 + S. harrisii Marsupialia No 1 1 1
Sha-Mir-7371-o14 None MIR-7371 AUAAAUU None None GL867599.1 282161 282220 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o15 None MIR-7371 CUUGGAU None None GL867599.1 283417 283476 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o16 None MIR-7371 AUAAAUU None None GL867599.1 284323 284382 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o17 None MIR-7371 CUUGGAU None None GL867599.1 284637 284696 + S. harrisii Marsupialia No 1 1 1
Sha-Mir-7371-o18 None MIR-7371 AUAAAUU None None GL867599.1 284786 284845 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o19 None MIR-7371 CUUGGAU None None GL867599.1 285477 285536 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o20 None MIR-7371 UCUGAUA None None GL867599.1 288456 288512 + S. harrisii Marsupialia Yes 1
Sha-Mir-7371-o24 None MIR-7371 AGUGGUG None None GL867599.1 330790 330846 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o25 None MIR-7371 AGUCACA None None GL867599.1 306076 306133 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o26 None MIR-7371 AGUCCCA None None GL867599.1 323224 323283 + S. harrisii Marsupialia No 1 1
Sha-Mir-7371-o27 None MIR-7371 AAGUAAC None None GL867599.1 309953 310010 + S. harrisii Marsupialia No 1
Sha-Mir-7371-o28 None MIR-7371 GUCGUCA None None GL867599.1 336354 336413 + S. harrisii Marsupialia No 1
Sha-Mir-7371-P11d None MIR-7371 ACGUGGA None None GL867599.1 264773 264832 + S. harrisii Marsupialia Yes
Sha-Mir-7371-P11e None MIR-7371 ACGUGGA None None GL867599.1 265109 265168 + S. harrisii Marsupialia Yes
Sha-Mir-7373-o1 None MIR-7373 AAUAUAA None None GL867601.1 2076373 2076427 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o2 None MIR-7373 CAGCUAC None None GL867601.1 2090784 2090838 - S. harrisii Marsupialia No 1
Sha-Mir-7373-o3 None MIR-7373 AGGCACU None None GL867601.1 2091074 2091128 - S. harrisii Marsupialia No
Sha-Mir-7373-o4 None MIR-7373 AGCCCUU None None GL867601.1 2081864 2081918 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o5 None MIR-7373 AGCCCUU None None GL867601.1 2074961 2075015 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o6 None MIR-7373 GUUAGAG None None GL867601.1 2080157 2080212 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o7 None MIR-7373 AGCCCUU None None GL867601.1 2089434 2089488 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8a None MIR-7373 AGCCCUU None None GL867601.1 2083689 2083746 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8b None MIR-7373 AGCCCUU None None GL867601.1 2083966 2084023 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8c None MIR-7373 AGCCCUU None None GL867601.1 2084243 2084300 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8d1 None MIR-7373 AGCCCUU None None GL867601.1 2085658 2085715 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8d2 None MIR-7373 AGCCCUU None None GL867601.1 2084520 2084577 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8e None MIR-7373 AGCCCUU None None GL867601.1 2085084 2085141 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8f None MIR-7373 AGCCCUU None None GL867601.1 2085945 2086002 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8g None MIR-7373 AGCCCUU None None GL867601.1 2086234 2086291 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8h None MIR-7373 AGCCCUU None None GL867601.1 2086519 2086576 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8i None MIR-7373 AGCCCUU None None GL867601.1 2086804 2086861 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o8j None MIR-7373 AGCCCUU None None GL867601.1 2087091 2087148 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9a None MIR-7373 AGCCCUU None None GL867601.1 2081577 2081634 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9b None MIR-7373 AGCCCUU None None GL867601.1 2081002 2081059 - S. harrisii Marsupialia No 1 1
Sha-Mir-7373-o9c None MIR-7373 AGCCCUU None None GL867601.1 2082143 2082200 - S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4a None MIR-7383 AAGGUAC None None GL867776.1 41842 41900 + S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4b None MIR-7383 AAGGUAC None None GL868515.1 2332 2390 - S. harrisii Marsupialia No 1 1
Sha-Mir-7383-P4c None MIR-7383 AAGGUAC None None GL867723.1 56066 56124 - S. harrisii Marsupialia No 1 1
Sha-Mir-7385-o1a None MIR-7385 AACUUAG None None GL867759.1 17410 17468 - S. harrisii Marsupialia No 1
Sha-Mir-7385-o1b None MIR-7385 AACUUAG None None GL867759.1 17134 17192 - S. harrisii Marsupialia No 1
Sha-Mir-7392-P2 None MIR-7392 ACGAGUA None None GL867604.1 507292 507347 + S. harrisii Marsupialia No 1
Sha-Mir-7392-P3 None MIR-7392 ACGAGUA None None GL867604.1 509380 509435 + S. harrisii Marsupialia No 1
Sha-Mir-7398-o5 None MIR-7398 AAAUUUC None None GL867608.1 2084664 2084724 + S. harrisii Marsupialia No 1
Sha-Mir-7398-o6 None MIR-7398 GUGUAGA None None GL867608.1 2087632 2087690 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o7 None MIR-7398 GUGUAGA None None GL867608.1 2088260 2088322 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o8 None MIR-7398 GUUGAGA None None GL867608.1 2090858 2090916 + S. harrisii Marsupialia No
Sha-Mir-7398-o9 None MIR-7398 GUGUAGA None None GL867608.1 2092125 2092182 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o13 None MIR-7398 AACCCUC None None GL867608.1 2103168 2103224 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-o14 None MIR-7398 AAAUUCU None None GL867608.1 2104962 2105021 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P5e None MIR-7398 GUGUGGA None None GL867608.1 2079471 2079531 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P5f None MIR-7398 GUGUGGA None None GL867608.1 2080041 2080101 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P9d-v1 None MIR-7398 UGUGUAG None None GL867608.1 2081489 2081549 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P9d-v2 None MIR-7398 GUGUAGA None None GL867608.1 2081490 2081548 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P9e-v1 None MIR-7398 UGUGUAG None None GL867608.1 2082124 2082184 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P9e-v2 None MIR-7398 GUGUAGA None None GL867608.1 2082125 2082183 + S. harrisii Marsupialia No 1
Sha-Mir-7398-P24c-v1 None MIR-7398 AUCUCAC None None GL867608.1 2099749 2099808 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P24c-v2 None MIR-7398 UCUCACC None None GL867608.1 2099749 2099808 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P24d-v1 None MIR-7398 AUCUCAC None None GL867608.1 2102079 2102138 + S. harrisii Marsupialia No 1 1
Sha-Mir-7398-P24d-v2 None MIR-7398 UCUCACC None None GL867608.1 2102079 2102138 + S. harrisii Marsupialia No 1 1
Sha-Mir-12475-P1 None MIR-12475 AUACGGU None None GL867614.1 336305 336365 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P2a None MIR-12475 AUACGGU None None GL867614.1 338936 338996 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P2b None MIR-12475 AUACGGU None None GL867614.1 337187 337247 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P3 None MIR-12475 ACACGGU None None GL867614.1 338074 338134 + S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P4 None MIR-12475 AGGCACU None None GL867614.1 342312 342372 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P5 None MIR-12475 AAACACU None None GL867614.1 345883 345943 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P6 None MIR-12475 UGGCAUC None None GL867614.1 347941 348002 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P7 None MIR-12475 AGCCAUU None None GL867614.1 348904 348964 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P8 None MIR-12475 AACGCUC None None GL867758.1 569 628 - S. harrisii Australidelphia No
Sha-Mir-12475-P9 None MIR-12475 AAACGCU None None GL867758.1 1832 1891 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P10 None MIR-12475 AAACACU None None GL867758.1 5377 5437 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P11 None MIR-12475 AAGCACU None None GL867758.1 7992 8052 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P12 None MIR-12475 AAACACU None None GL867758.1 13885 13946 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P13 None MIR-12475 AAACGCU None None GL867758.1 15164 15224 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P14 None MIR-12475 AAACGCU None None GL867758.1 17681 17741 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P15 None MIR-12475 AAACACU None None GL867758.1 21633 21692 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P16 None MIR-12475 AAACACU None None GL867758.1 22924 22983 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P17 None MIR-12475 CAAUGUG None None GL867762.1 5022 5082 + S. harrisii Australidelphia No 1
Sha-Mir-12475-P18 None MIR-12475 UCUGGUC None None GL867762.1 6910 6970 + S. harrisii Australidelphia No 1
Sha-Mir-12475-P19 None MIR-12475 AGACAUU None None GL867762.1 9239 9299 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20a None MIR-12475 AGACAUU None None GL868171.1 9713 9773 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20b None MIR-12475 AGACAUU None None GL867762.1 27481 27541 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20c None MIR-12475 AGACAUU None None GL867762.1 13085 13145 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P20d None MIR-12475 AGACAUU None None GL868173.1 1850 1910 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P21 None MIR-12475 UGCAUCC None None GL867809.1 8611 8670 - S. harrisii Australidelphia Yes 1 1 1
Sha-Mir-12475-P22 None MIR-12475 AGCCUUU None None GL867809.1 15354 15414 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P23 None MIR-12475 AGACAUU None None GL867809.1 16790 16850 - S. harrisii Australidelphia Yes 1 1
Sha-Mir-12475-P24 None MIR-12475 AGCCAUU None None GL867809.1 18228 18288 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P25 None MIR-12475 AGCCUUU None None GL867809.1 21090 21150 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P26 None MIR-12475 AGACAUU None None GL867809.1 26679 26739 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27a1 None MIR-12475 AGACAUC None None GL868173.1 372 432 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27a2 None MIR-12475 AGACAUC None None GL867809.1 31494 31554 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27b None MIR-12475 AGACAUC None None GL867809.1 33879 33939 - S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P27c None MIR-12475 UGACAUC None None GL868171.1 6266 6326 + S. harrisii Australidelphia No 1 1 1
Sha-Mir-12475-P28 None MIR-12475 AAUGUGU None None GL867809.1 37724 37783 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P29 None MIR-12475 AGCCUUU None None GL867809.1 35328 35388 - S. harrisii Australidelphia No 1 1
Sha-Mir-12475-P30 None MIR-12475 AAUGUGU None None GL867809.1 35804 35864 - S. harrisii Australidelphia No 1 1
Sha-Novel-13 None SHA-NOVEL-13 GGGCAGA None None GL867623.1 1370576 1370635 - S. harrisii S. harrisii No 1
Sha-Novel-14-P1a None SHA-NOVEL-14 UUCCCAA None None GL867924.1 37213 37276 - S. harrisii S. harrisii No 1
Sha-Novel-14-P1b None SHA-NOVEL-14 UUCCCAA None None GL867924.1 27824 27887 - S. harrisii S. harrisii No 1
Sha-Novel-14-P2 None SHA-NOVEL-14 GUGCCCA None None GL867900.1 156722 156780 + S. harrisii S. harrisii No 1
Sha-Novel-14-P3 None SHA-NOVEL-14 GUGCCCA None None GL867924.1 40191 40249 - S. harrisii S. harrisii No 1
Sha-Novel-14-P4 None SHA-NOVEL-14 UUCCCAA None None GL867924.1 17005 17071 - S. harrisii S. harrisii No 1
Sha-Novel-14-P5a None SHA-NOVEL-14 UUCCCAA None None GL867924.1 31103 31166 - S. harrisii S. harrisii No 1
Sha-Novel-14-P5b None SHA-NOVEL-14 UUCCCAA None None GL867924.1 13729 13792 - S. harrisii S. harrisii No 1
Sha-Novel-15 None SHA-NOVEL-15 GUCCGGC None None GL867614.1 335419 335477 + S. harrisii S. harrisii No 1 1 1
Sha-Novel-16 None SHA-NOVEL-16 GGCUAAG None None GL849918.1 206081 206139 - S. harrisii S. harrisii No 1
Sha-Novel-17 None SHA-NOVEL-17 UUGGGGG None None GL867582.1 180996 181052 + S. harrisii S. harrisii Yes 1
Sha-Novel-18-v1 sha-mir-340 SHA-NOVEL-18 CUAUAAA None MIMAT0022775 GL834730.1 741072 741130 - S. harrisii S. harrisii No 1
Sha-Novel-18-v2 sha-mir-340 SHA-NOVEL-18 CAGUCUC None MIMAT0022775 GL834730.1 741073 741129 - S. harrisii S. harrisii No 1
Sha-Novel-19 None SHA-NOVEL-19 ACGCCUA None None GL857015.1 123701 123764 - S. harrisii S. harrisii No
Sha-Novel-20 None SHA-NOVEL-20 UCAAAUC None None GL834640.1 1948343 1948402 + S. harrisii S. harrisii No 1
Sha-Novel-21 None SHA-NOVEL-21 AGGAUAG None None GL849587.1 418445 418508 - S. harrisii S. harrisii No
Sha-Novel-22-P1a-v1 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 81071 81126 + S. harrisii S. harrisii No 1
Sha-Novel-22-P1a-v2 None SHA-NOVEL-22 UGAGGUU None None GL867904.1 81070 81127 + S. harrisii S. harrisii No 1
Sha-Novel-22-P1b-v1 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 86588 86643 + S. harrisii S. harrisii No 1
Sha-Novel-22-P1b-v2 None SHA-NOVEL-22 UGAGGUU None None GL867904.1 86587 86644 + S. harrisii S. harrisii No 1
Sha-Novel-22-P2a-v1 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 82146 82202 + S. harrisii S. harrisii No 1
Sha-Novel-22-P2a-v2 None SHA-NOVEL-22 UGAGGUU None None GL867904.1 82145 82203 + S. harrisii S. harrisii No 1
Sha-Novel-22-P2b-v1 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 82755 82811 + S. harrisii S. harrisii No 1
Sha-Novel-22-P2b-v2 None SHA-NOVEL-22 UGAGGUU None None GL867904.1 82754 82812 + S. harrisii S. harrisii No 1
Sha-Novel-22-P3 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 83832 83888 + S. harrisii S. harrisii No 1
Sha-Novel-22-P4 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 84439 84494 + S. harrisii S. harrisii No 1
Sha-Novel-22-P5-v1 None SHA-NOVEL-22 GAGGUUU None None GL867904.1 85513 85568 + S. harrisii S. harrisii No 1
Sha-Novel-22-P5-v2 None SHA-NOVEL-22 UGAGGUU None None GL867904.1 85512 85569 + S. harrisii S. harrisii No 1

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