| MirGeneDB ID | Neu-Mir-1541 |
|---|
| Family name |
MIR-1541 (all species) |
|---|
| Seed |
GGUGUGC |
|---|
| Species |
Tammar Wallaby (Notamacropus eugenii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Mdo-Mir-1541
Sha-Mir-1541
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(GCA_028372415.1_mMacEug1.pri) |
CM051817.1: 18383837-18383896 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCAGCAUUCUCAAUGGCCCUCAACCUGUGACAUCCCAACUGGGCACACUGUUGUGAUGAUAGACAGAUGGUGUGCUUGUUUGGAUGUGGCAGUUUGUAAUGGGACCAACAUCCGGUGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCAGCAUUCUCAAUGGCCCU--| C G C U GUGAUG
CAA CUGU ACAUCC AAC GGGCACACUGUU \
GUU GACG UGUAGG UUG UUCGUGUGGUAG A
UAGUGGCCUACAACCAGGGUAAU^ U G U - ACAGAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Neu-Mir-1541_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACAUCCCAACUGGGCACACUGUU -23
Get sequence
|
|---|
| Mature sequence |
Neu-Mir-1541_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGGUGUGCUUGUUUGGAUGUGG -60
Get sequence
|
|---|
