| MirGeneDB ID | Sha-Mir-1541 |
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| Family name |
MIR-1541 (all species) |
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| Seed |
GGUGUGC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-1541
Neu-Mir-1541
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL849772.1: 43949-44008 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUAUUCUCAACCUAUGACCUUCAACCUGUGACAUCCCAACUGGGCACACUGUUGUGAUGAUGGACAGAUGGUGUGCUUGUUUGGAUGUGGCAGUUUGCAAUGGGACAGACAUCCAGUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUAUUCUCAACCUAUGACCUU--| C G C U GUGAUG
CAA CUGU ACAUCC AAC GGGCACACUGUU \
GUU GACG UGUAGG UUG UUCGUGUGGUAG A
UAGUGACCUACAGACAGGGUAAC^ U G U - ACAGGU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-1541_5p* |
| mirBase accession | None |
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| Sequence |
0- ACAUCCCAACUGGGCACACUGUU -23
Get sequence
|
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| Mature sequence |
Sha-Mir-1541_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGGUGUGCUUGUUUGGAUGUGG -60
Get sequence
|
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