MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-7309

Family name MIR-7309 (all species)
Seed CAAUGUG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Mdo-Mir-7309 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL849745.1: 178841-178900 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUCAUCUGCUUUUGUUUGCACACUUCCAGGGAUGGGGAGCUCAGUCAGUGUGUUCCUCCAUUCACUCAAUGUGUUCCCCCUCUCAGGAGUUGUUGCAUUCUAAGCCUCAUGGGAAAG
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Structure
        10         20         30        40        50         
GUGGUCAUCUGCUUUUGUU-   -|  C    A    U       U  GUC   GUGUUC 
                    UGC ACA UUCC GGGA GGGGAGC CA   AGU      C
                    ACG UGU GAGG CUCU CCCCUUG GU   UCA      U
GAAAGGGUACUCCGAAUCUU   U^  U    A    C       U  AAC   CUUACC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7309_5p*

mirBase accessionNone
Sequence
0- AGGGAUGGGGAGCUCAGUCAGU -22
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Mature sequence

Sha-Mir-7309_3p

mirBase accessionNone
Sequence
38- UCAAUGUGUUCCCCCUCUCAGG -60
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