| MirGeneDB ID | Mdo-Mir-1547 |
|---|
| Family name |
MIR-1547 (all species) |
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| Seed |
AUCAGAG |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-1547
|
|---|
| Paralogues |
|
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| Orthologues |
Neu-Mir-1547
Sha-Mir-1547
|
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| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
4: 335163709-335163769 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCAUCCCUACUUGAUAAAGAACGUAUGAUGUAUCAGAGUCUUGGGUCCUUGUGUAGAUGCUUUGAGACUUCAAGGAUCCCUGACUUGAUCAUUGUGGGUUCUCCCUUCACCGAUGCAGCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCAUCCCUACUUGAUAA--| G UG U G UU U- AGAUG
AGAAC UA AUG AUCA AGUC GGGUCCUUG GU C
UCUUG GU UAC UAGU UCAG CCUAGGAAC CA U
CUCGACGUAGCCACUUCCC^ G GU - - UC UU GAGUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mdo-Mir-1547_5p |
| mirBase accession | MIMAT0006147 |
|---|
| Sequence |
0- UAUCAGAGUCUUGGGUCCUUGUGU -24
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1547-5p
|
|---|
| Star sequence |
Mdo-Mir-1547_3p* |
| mirBase accession | MIMAT0026771 |
|---|
| Sequence |
39- UCAAGGAUCCCUGACUUGAUCA -61
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-1547-3p
|
|---|
