| MirGeneDB ID | Sha-Mir-1546 |
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| Family name |
MIR-1546 (all species) |
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| Seed |
CAGGGAU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
sha-mir-1546
|
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| Paralogues |
Sha-Mir-1546-as
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| Orthologues |
Mdo-Mir-1546
Mdo-Mir-1546-as
Neu-Mir-1546
Neu-Mir-1546-as
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL842385.1: 61312-61372 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGGAACAGAAGGAAGAUGCCUUGGCGGGAAUCAGGGAUUCUCAGGGAUGGAAGUGAGACAAAAUACCUUCCACCUCUCAGAAUCCCUAUUUUCUUCCAAGGCUGCAGCUCCGAGUGCCGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAACAGAAGGAAGAU--| C UC C A UGAGAC
GCCUUGG GGGAA AGGGAUUCU AGGG UGGAAG \
CGGAACC UCUUU UCCCUAAGA UCUC ACCUUC A
CGGCCGUGAGCCUCGACGU^ U UA C C CAUAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1546_5p |
| mirBase accession | MIMAT0022795 |
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| Sequence |
0- UCAGGGAUUCUCAGGGAUGGAAG -23
Get sequence
|
|---|
| Star sequence |
Sha-Mir-1546_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUCCACCUCUCAGAAUCCCUAUUU -61
Get sequence
|
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