MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-1546

Family name MIR-1546 (all species)
Seed CAGGGAU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1546
Paralogues Mdo-Mir-1546-as 
Orthologues Neu-Mir-1546  Neu-Mir-1546-as  Sha-Mir-1546  Sha-Mir-1546-as 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)		 3: 518067385-518067445 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1546)		 Mir-1546 3: 518067385-518067445 [-] UCSC Ensembl
Mir-1546-as 3: 518067388-518067446 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUUGAUUGAAGAAUGCCUUGCCGGAAAUCAGGGAUUCUCAGGGAUGGAAGUGAGACAAAAUACCUUCCACCUCUCAGAAUCCCUAUUUUCUUUCAAGGCCCAGCUCCAACUACAAGUA
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Structure
        10          20        30        40        50          
AAAAUUGAUUGAAGAAU--|     CC     UC         C    A      UGAGAC 
                   GCCUUG  GGAAA  AGGGAUUCU AGGG UGGAAG      \
                   CGGAAC  UCUUU  UCCCUAAGA UCUC ACCUUC      A
AUGAACAUCAACCUCGACC^     UU     UA         C    C      CAUAAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1546_5p
mirBase accessionMIMAT0006146
Sequence 
0- UCAGGGAUUCUCAGGGAUGGAAG -23
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Proposed targets TargetScanVert: mdo-miR-1546-5p
Star sequence

Mdo-Mir-1546_3p*
mirBase accessionMIMAT0026770
Sequence 
37- UUCCACCUCUCAGAAUCCCUAUUU -61
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Proposed targets TargetScanVert: mdo-miR-1546-3p