MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-1546-as

Family name MIR-1546 (all species)
Seed AGGGAUU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1546b
Paralogues Mdo-Mir-1546 
Orthologues Neu-Mir-1546  Neu-Mir-1546-as  Sha-Mir-1546  Sha-Mir-1546-as 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)		 3: 518067388-518067446 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1546-as)		 Mir-1546 3: 518067385-518067445 [-] UCSC Ensembl
Mir-1546-as 3: 518067388-518067446 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUAGUUGGAGCUGGGCCUUGAAAGAAAAUAGGGAUUCUGAGAGGUGGAAGGUAUUUUGUCUCACUUCCAUCCCUGAGAAUCCCUGAUUUCCGGCAAGGCAUUCUUCAAUCAAUUUUU
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Structure
        10          20        30        40        50         
UUGUAGUUGGAGCUGGG--|    AAA    A          G  A        GUAUUU 
                   CCUUG   GAAA UAGGGAUUCU AG GGUGGAAG      \
                   GGAAC   CUUU GUCCCUAAGA UC CUACCUUC      U
UUUUUAACUAACUUCUUAC^    GGC    A          G  C        ACUCUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-1546-as_5p
mirBase accessionMIMAT0050235
Sequence 
0- UAGGGAUUCUGAGAGGUGGAAG -22
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Star sequence

Mdo-Mir-1546-as_3p*
mirBase accessionMIMAT0050236
Sequence 
37- UCCAUCCCUGAGAAUCCCUGAU -59
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