| MirGeneDB ID | Sha-Mir-1546-as |
|---|
| Family name |
MIR-1546 (all species) |
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| Seed |
AGGGAUU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
|
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| Paralogues |
Sha-Mir-1546
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| Orthologues |
Mdo-Mir-1546
Mdo-Mir-1546-as
Neu-Mir-1546
Neu-Mir-1546-as
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(DEVIL_add) |
GL842385.1: 61315-61373 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGCACUCGGAGCUGCAGCCUUGGAAGAAAAUAGGGAUUCUGAGAGGUGGAAGGUAUUUUGUCUCACUUCCAUCCCUGAGAAUCCCUGAUUCCCGCCAAGGCAUCUUCCUUCUGUUCCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCACUCGGAGCUGCAG-- AA-| AA G A GUAUUU
CCUUGG GAA UAGGGAUUCU AG GGUGGAAG \
GGAACC CUU GUCCCUAAGA UC CUACCUUC U
GACCUUGUCUUCCUUCUAC GCC^ A- G C ACUCUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1546-as_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGGGAUUCUGAGAGGUGGAAG -22
Get sequence
|
|---|
| Star sequence |
Sha-Mir-1546-as_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UCCAUCCCUGAGAAUCCCUGAU -59
Get sequence
|
|---|
