| MirGeneDB ID | Neu-Mir-1546 |
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| Family name |
MIR-1546 (all species) |
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| Seed |
CAGGGAU |
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| Species |
Tammar Wallaby (Notamacropus eugenii) |
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| MiRBase ID |
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| Paralogues |
Neu-Mir-1546-as
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| Orthologues |
Mdo-Mir-1546
Mdo-Mir-1546-as
Sha-Mir-1546
Sha-Mir-1546-as
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 16147638-16147697 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAUGGCUUGAAGAAUGCCUUGCCGGAAAUCAGGGAUUCUCAGGGAUGGAAGUGAGACAAAAUACCUUCCACCUCUCAGAAUCCCUAUUUUCUUUCAAGGCGCAGCUCCAACUACAAGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAAAUGGCUUGAAGAAU-| CC UC C A UGAGAC
GCCUUG GGAAA AGGGAUUCU AGGG UGGAAG \
CGGAAC UCUUU UCCCUAAGA UCUC ACCUUC A
UGAACAUCAACCUCGACG^ UU UA C C CAUAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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| Mature sequence |
Neu-Mir-1546_5p |
| mirBase accession | None |
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| Sequence |
0- UCAGGGAUUCUCAGGGAUGGAAGU -24
Get sequence
|
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| Star sequence |
Neu-Mir-1546_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUCCACCUCUCAGAAUCCCUAUU -60
Get sequence
|
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