| MirGeneDB ID | Neu-Mir-1546-as |
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| Family name |
MIR-1546 (all species) |
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| Seed |
AGGGAUU |
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| Species |
Tammar Wallaby (Notamacropus eugenii) |
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| MiRBase ID |
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| Paralogues |
Neu-Mir-1546
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| Orthologues |
Mdo-Mir-1546
Mdo-Mir-1546-as
Sha-Mir-1546
Sha-Mir-1546-as
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(GCA_028372415.1_mMacEug1.pri) |
CM051816.1: 16147637-16147695 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGUAGUUGGAGCUGCGCCUUGAAAGAAAAUAGGGAUUCUGAGAGGUGGAAGGUAUUUUGUCUCACUUCCAUCCCUGAGAAUCCCUGAUUUCCGGCAAGGCAUUCUUCAAGCCAUUUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGUAGUUGGAGCUGCG--| AAA A G A GUAUUU
CCUUG GAAA UAGGGAUUCU AG GGUGGAAG \
GGAAC CUUU GUCCCUAAGA UC CUACCUUC U
UUUUUACCGAACUUCUUAC^ GGC A G C ACUCUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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| Mature sequence |
Neu-Mir-1546-as_5p |
| mirBase accession | None |
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| Sequence |
0- UAGGGAUUCUGAGAGGUGGAAG -22
Get sequence
|
|---|
| Star sequence |
Neu-Mir-1546-as_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UCCAUCCCUGAGAAUCCCUGAU -59
Get sequence
|
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