MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-7397

Family name MIR-7397 (all species)
Seed GACCAAG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7397
Paralogues
Orthologues Neu-Mir-7397  Sha-Mir-7397 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)		 X: 47672118-47672173 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7397)		 Mir-7392-P1b X: 47647594-47647650 [+] UCSC Ensembl
Mir-7393 X: 47653725-47653778 [+] UCSC Ensembl
Mir-7392-P1a X: 47656551-47656607 [+] UCSC Ensembl
Mir-7394-P1 X: 47660934-47660987 [+] UCSC Ensembl
Mir-7395 X: 47661482-47661537 [+] UCSC Ensembl
Mir-7394-P2 X: 47667188-47667241 [+] UCSC Ensembl
Mir-7397 X: 47672118-47672173 [+] UCSC Ensembl
Mir-7394-P3 X: 47675602-47675655 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUGCAAAGUAUGAUUGAGUUAUCUUAGGAAUCUGUUUGUCUUAGUGACAUGUGCAAAUAAAGGUGACCAAGACCCACAGAUUCCCAGGGUAUACUUCUUUGUACACGUUCACUA
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Structure
        10         20         30        40        50       
ACCUGCAAAGUAUGAUU-    -|     A         UU     A  G  AUGUGC 
                  GAGU UAUCUU GGAAUCUGU  GUCUU GU AC      A
                  UUCA AUGGGA CCUUAGACA  CAGAA CA UG      A
AUCACUUGCACAUGUUUC    U^     C         CC     C  G  GAAAUA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7397_5p*
mirBase accessionMIMAT0028892
Sequence 
0- AAUCUGUUUGUCUUAGUGACA -21
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Proposed targets TargetScanVert: mdo-miR-7397-5p
Mature sequence

Mdo-Mir-7397_3p
mirBase accessionMIMAT0028893
Sequence 
35- UGACCAAGACCCACAGAUUCC -56
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Proposed targets TargetScanVert: mdo-miR-7397-3p