Mir-7394-P3

MirGeneDB ID

Mdo-Mir-7394-P3

Family name

MIR-7394 (all species)

Seed

GUGACCU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7394b

Paralogues

Mdo-Mir-7394-P1 Mdo-Mir-7394-P2

Orthologues

Neu-Mir-7394-P3 Sha-Mir-7394-P3

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 47675602-47675655 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7394-P3)

Mir-7392-P1b X: 47647594-47647650 [+] UCSC Ensembl
Mir-7393 X: 47653725-47653778 [+] UCSC Ensembl
Mir-7392-P1a X: 47656551-47656607 [+] UCSC Ensembl
Mir-7394-P1 X: 47660934-47660987 [+] UCSC Ensembl
Mir-7395 X: 47661482-47661537 [+] UCSC Ensembl
Mir-7394-P2 X: 47667188-47667241 [+] UCSC Ensembl
Mir-7397 X: 47672118-47672173 [+] UCSC Ensembl
Mir-7394-P3 X: 47675602-47675655 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAGUCAUCAGACUUGGGUUGCCCCAGGUACAUGUAUGCCCAGGUUACUUGCUGCUCUACAUGUGACCUUGCCAUACAUGUUCCUGUUGCAUACCUCUCCUGUAGUUCACUGG

Get precursor sequence

Structure

        10         20         30        40        50      
UGGAGUCAUCAGACUUG-   -|  CC    U         CCC       U  CUG 
                  GGU UGC  CAGG ACAUGUAUG   AGGUUAC UG   C
                  CCA ACG  GUCC UGUACAUAC   UCCAGUG AC   U
GGUCACUUGAUGUCCUCU   U^  UU    U         CGU       U  AUC 
  110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-7394-P3_5p* (predicted)

mirBase accession

MIMAT0028894

Sequence

0- ACAUGUAUGCCCAGGUUACUUG -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7394b-5p

Mature sequence

Mdo-Mir-7394-P3_3p

mirBase accession

MIMAT0028895

Sequence

32- UGUGACCUUGCCAUACAUGUUC -54

Get sequence

Proposed targets

TargetScanVert: mdo-miR-7394b-3p