Mir-7394-P2

MirGeneDB ID

Mdo-Mir-7394-P2

Family name

MIR-7394 (all species)

Seed

GUGACCU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-7394c

Paralogues

Mdo-Mir-7394-P1 Mdo-Mir-7394-P3

Orthologues

Neu-Mir-7394-P2 Sha-Mir-7394-P2

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(monDom5_add)

X: 47667188-47667241 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-7394-P2)

Mir-7392-P1b X: 47647594-47647650 [+] UCSC Ensembl
Mir-7393 X: 47653725-47653778 [+] UCSC Ensembl
Mir-7392-P1a X: 47656551-47656607 [+] UCSC Ensembl
Mir-7394-P1 X: 47660934-47660987 [+] UCSC Ensembl
Mir-7395 X: 47661482-47661537 [+] UCSC Ensembl
Mir-7394-P2 X: 47667188-47667241 [+] UCSC Ensembl
Mir-7397 X: 47672118-47672173 [+] UCSC Ensembl
Mir-7394-P3 X: 47675602-47675655 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGUGACAUUAGAAUUUAGUUGCACCAGCCACACAUAUGCCCAGGUGACAUGCUGUUCUACAUGUGACCUCACCAUAUGUGUUCCUGUUGUAUACCUGCUUAUCCAAGUUCAGU

Get precursor sequence

Structure

        10        20          30        40        50      
UGGUGACAUUAGAAUUUAGU--|   C   CC         CCC    G    GCUG 
                      UGCA CAG  ACACAUAUG   AGGU ACAU    U
                      AUGU GUC  UGUGUAUAC   UCCA UGUA    U
UGACUUGAACCUAUUCGUCCAU^   U   CU         CAC    G    CAUC 
  110       100        90        80        70        60