MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-7393

Family name MIR-7393 (all species)
Seed GUGACCU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7393
Paralogues
Orthologues
Node of Origin (locus) M. domestica
Node of Origin (family) M. domestica
Genome context
(monDom5_add)		 X: 47653725-47653778 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7393)		 Mir-7392-P1b X: 47647594-47647650 [+] UCSC Ensembl
Mir-7393 X: 47653725-47653778 [+] UCSC Ensembl
Mir-7392-P1a X: 47656551-47656607 [+] UCSC Ensembl
Mir-7394-P1 X: 47660934-47660987 [+] UCSC Ensembl
Mir-7395 X: 47661482-47661537 [+] UCSC Ensembl
Mir-7394-P2 X: 47667188-47667241 [+] UCSC Ensembl
Mir-7397 X: 47672118-47672173 [+] UCSC Ensembl
Mir-7394-P3 X: 47675602-47675655 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGAAGCCCUUGAAUUGAGAUGCUCUGGGGACGAGUAUAUUUUGGUCACAUGGUUACCUACAUGUGACCUUUGUAUACCCGUCCCUAGUGUAUACUUUUUUAUACAAAUCCAGU
Get precursor sequence
Structure
        10          20        30        40        50      
GGGAAGCCCUUGAAUUG-  -|   U         A      UUU         GUU 
                  AG AUGC CUGGGGACG GUAUAU   GGUCACAUG   A
                  UC UAUG GAUCCCUGC CAUAUG   CCAGUGUAC   C
UGACCUAAACAUAUUUUU  A^   U         C      UUU         AUC 
  110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 relative to what is annoated here and which corresponds to the cut in Sarcophilus.
3' NTU No
MotifsNo
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Mdo-Mir-7393_5p*
mirBase accessionMIMAT0028884
Sequence 
0- ACGAGUAUAUUUUGGUCACAUG -22
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Proposed targets TargetScanVert: mdo-miR-7393-5p
Mature sequence

Mdo-Mir-7393_3p
mirBase accessionMIMAT0028885
Sequence 
32- UGUGACCUUUGUAUACCCGUCC -54
Get sequence
Proposed targets TargetScanVert: mdo-miR-7393-3p