| MirGeneDB ID | Sha-Mir-12316-P2-v1 |
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| Family name |
MIR-12316 (all species) |
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| Seed |
UGAAAGG |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Mir-12316-P1-v1
Sha-Mir-12316-P1-v2
Sha-Mir-12316-P2-v2
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| Orthologues |
Neu-Mir-12316-P2-v1
Neu-Mir-12316-P2-v2
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL834788.1: 1288785-1288849 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGAUUCUGGGUGGUGUUGGUUGGACUGGGUGGCCUCUGAGGUUCCUUCCAACUCUGAGUUUCUGUGACUGGUUUGAAAGGGAUCAGAGGUCAUUUGGUCCAACCCUCUUGCUUCAAGCCGGACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAGAUUCUGGGUGGUGUU--| UG GG - C UCUGAGUU
GGUUGGAC GGUGGCCUCUGA UUCCUU C AAC U
CCAACCUG UUACUGGAGACU AGGGAA G UUG C
UCAGGCCGAACUUCGUUCUC^ GU -- A U GUCAGUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Mir-12316-P2-v1_5p* |
| mirBase accession | None |
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| Sequence |
0- UGGCCUCUGAGGUUCCUUCCAAC -23
Get sequence
|
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| Mature sequence |
Sha-Mir-12316-P2-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUGAAAGGGAUCAGAGGUCAUU -65
Get sequence
|
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