MirGeneDB ID | Neu-Mir-12316-P1-v1 |
---|---|
Family name | MIR-12316 (all species) |
Seed | UGAAAGG |
Species | Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID | |
Paralogues | Neu-Mir-12316-P1-v2 Neu-Mir-12316-P2-v1 Neu-Mir-12316-P2-v2 |
Orthologues | Mdo-Mir-12316-P1-v1 Mdo-Mir-12316-P1-v2 Sha-Mir-12316-P1-v1 Sha-Mir-12316-P1-v2 |
Node of Origin (locus) | Marsupialia |
Node of Origin (family) | Marsupialia |
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051813.1: 735787892-735787956 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAUUCUUAUUCAGGUGUUGGUUGGACUAGAUGGCCUCUGAGGUUCCUUCCAACUCCGACAUUCUGUAAUUGGUUUGAAAGGGAUCAGAGGUCAUUUGGUCCAUCCCUCUGCCUCCAAACCAGACUGet precursor sequence |
Structure | 10 20 30 40 50 60 GAUUCUUAUUCAGGUGUU--| U GG - C UCCGACAU GG UGGACUAGAUGGCCUCUGA UUCCUU C AAC U CC ACCUGGUUUACUGGAGACU AGGGAA G UUG C UCAGACCAAACCUCCGUCUC^ U -- A U GUUAAUGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17) |
Star sequence | Neu-Mir-12316-P1-v1_5p* |
mirBase accession | None |
Sequence |
0- UGGCCUCUGAGGUUCCUUCCAAC -23
Get sequence
|
Mature sequence | Neu-Mir-12316-P1-v1_3p |
mirBase accession | None |
Sequence |
43- UUGAAAGGGAUCAGAGGUCAUU -65
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