| MirGeneDB ID | Mdo-Mir-12316-P1-v1 |
|---|
| Family name |
MIR-12316 (all species) |
|---|
| Seed |
UGAAAGG |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Mdo-Mir-12316-P1-v2
|
|---|
| Orthologues |
Neu-Mir-12316-P1-v1
Neu-Mir-12316-P1-v2
Sha-Mir-12316-P1-v1
Sha-Mir-12316-P1-v2
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(monDom5_add) |
1: 727221039-727221103 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCCGCUUGCUCAGGUGUUGGCUGGACCAGGUGGCCUCUGAGGUUCCUUCCAACUCCGACAUUCUGUAAUUGGUUUGAAAGGGAUCAGAGGUCAUUUGGUCCAUCCCUCUGCCUCCAAAGCCGACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCCGCUUGCUCAGGUGUU--| C GG - C UCCGACAU
GG UGGACCAGGUGGCCUCUGA UUCCUU C AAC U
CC ACCUGGUUUACUGGAGACU AGGGAA G UUG C
UCAGCCGAAACCUCCGUCUC^ U -- A U GUUAAUGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-12316-P1-v1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCCUCUGAGGUUCCUUCCAAC -23
Get sequence
|
|---|
| Mature sequence |
Mdo-Mir-12316-P1-v1_3p |
| mirBase accession | None |
|---|
| Sequence |
43- UUGAAAGGGAUCAGAGGUCAUU -65
Get sequence
|
|---|
