| MirGeneDB ID | Mdo-Mir-12316-P1-v2 |
|---|
| Family name |
MIR-12316 (all species) |
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| Seed |
UUGAAAG |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
|
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| Paralogues |
Mdo-Mir-12316-P1-v1
|
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| Orthologues |
Neu-Mir-12316-P1-v1
Neu-Mir-12316-P1-v2
Sha-Mir-12316-P1-v1
Sha-Mir-12316-P1-v2
|
|---|
| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
1: 727221039-727221103 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCGCUUGCUCAGGUGUUGGCUGGACCAGGUGGCCUCUGAGGUUCCUUCCAACUCCGACAUUCUGUAAUUGGUUUGAAAGGGAUCAGAGGUCAUUUGGUCCAUCCCUCUGCCUCCAAAGCCGACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCCGCUUGCUCAGGUGUU--| C GG - C CCGACAU
GG UGGACCAGGUGGCCUCUGA UUCCUU C AACU U
CC ACCUGGUUUACUGGAGACU AGGGAA G UUGG C
UCAGCCGAAACCUCCGUCUC^ U -- A U UUAAUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Mdo-Mir-12316-P1-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCCUCUGAGGUUCCUUCCAACU -24
Get sequence
|
|---|
| Mature sequence |
Mdo-Mir-12316-P1-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUUGAAAGGGAUCAGAGGUCAUU -65
Get sequence
|
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