MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-7254-v1

Family name MIR-7254 (all species)
Seed CACCACC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-7254
Paralogues Mdo-Mir-7254-v2 
Orthologues Neu-Mir-7254-v1  Sha-Mir-7254-v1 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
1: 398141671-398141731 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7254-v1)
Mir-7254-v2 1: 398141670-398141732 [+] UCSC Ensembl
Mir-7254-v1 1: 398141671-398141731 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUGAUGCGCGAUGAUGUCAUUCCCAUAUCACCACCUCCUUGAAUCCUGUUCUAAUGUGAGUGAUGCAGAGUUCAGGGUGGAUGUGGCCUGGGAUUGAACAGGUGAGCUUCUAUGGCCA
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Structure
        10          20        30        40        50          
UGCCUGAUGCGCGAUGA-  -|  U     UA    CA  U       UC    UCUAAUG 
                  UG UCA UCCCA  UCAC  CC CCUUGAA  CUGU       \
                  AC AGU AGGGU  GGUG  GG GGGACUU  GACG       U
ACCGGUAUCUUCGAGUGG  A^  U     CC    UA  U       GA    UAGUGAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-7254-v1_5p

mirBase accessionMIMAT0028474
Sequence
0- UCACCACCUCCUUGAAUCCUGU -22
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Proposed targets TargetScanVert: mdo-miR-7254-5p
Star sequence

Mdo-Mir-7254-v1_3p*

mirBase accessionMIMAT0028475
Sequence
39- AGAGUUCAGGGUGGAUGUGGCC -61
Get sequence
Proposed targets TargetScanVert: mdo-miR-7254-3p