| MirGeneDB ID | Sha-Mir-12472 |
|---|
| Family name |
MIR-12472 (all species) |
|---|
| Seed |
CCCCCGG |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Mdo-Mir-12472
Neu-Mir-12472
|
|---|
| Node of Origin (locus) |
Marsupialia
|
|---|
| Node of Origin (family) |
Marsupialia
|
|---|
Genome context
(DEVIL_add) |
GL861720.1: 466102-466156 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGGACGGAAGGCGGAAGCGGAGCGUGAGCGGGAGGCCGAGCCGGGGGAGCGGCUCUCGUAGCUCCCCCGGGCUCCGGACCUCGCAGGAAGGAGGGCGUUACCGCCGCUGCCUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGACGGAAGGCGGAAGCGGAGCGUGA---- AGG - -| GGCU
GCGGG CC GAG CCGGGGGAGC C
CGCUC GG CUC GGCCCCCUCG U
UGGUCCGUCGCCGCCAUUGCGGGAGGAAGGA CA- C G^ AUGC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Sha-Mir-12472_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGAGGCCGAGCCGGGGGAGC -20
Get sequence
|
|---|
| Mature sequence |
Sha-Mir-12472_3p |
| mirBase accession | None |
|---|
| Sequence |
32- UCCCCCGGGCUCCGGACCUCGCA -55
Get sequence
|
|---|
