| MirGeneDB ID | Sha-Mir-12358-v2 |
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| Family name |
MIR-12358 (all species) |
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| Seed |
UACCGAU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Mir-12358-v1
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| Orthologues |
Mdo-Mir-12358-v2
Neu-Mir-12358-v2
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL849765.1: 1285710-1285772 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGGACAUGAAUGGUCCUGGAGGGUGCACCCAUACCGAUGAGCUCACAGAUCUAUUAUGCCAUGCUUUAAAGAUCUAUGAUUUCGUCGGUGUGAGUAUUCCUUCUACCAUCACCGGUUACGGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AGGACAUGAAUGGUCCU--| UGC C C C AUUAUGCC
GGAGGG AC CAUACCGAUGAG UCA AGAUCU \
UCUUCC UG GUGUGGCUGCUU AGU UCUAGA A
GCGGCAUUGGCCACUACCA^ UUA A U A AAUUUCGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-12358-v2_5p |
| mirBase accession | None |
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| Sequence |
0- AUACCGAUGAGCUCACAGAUCU -22
Get sequence
|
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| Star sequence |
Sha-Mir-12358-v2_3p* |
| mirBase accession | None |
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| Sequence |
41- AUCUAUGAUUUCGUCGGUGUGA -63
Get sequence
|
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